J5_6WDB_006
3D structure
- PDB id
- 6WDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6WDB|1|1|U|2076, 6WDB|1|1|G|2428, 6WDB|1|1|G|2429, 6WDB|1|1|A|2430, 6WDB|1|1|U|2431, 6WDB|1|1|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WDB_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1383
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WDB|1|1|U|2074
6WDB|1|1|U|2075
6WDB|1|1|U|2076
6WDB|1|1|A|2077
*
6WDB|1|1|U|2243
6WDB|1|1|U|2244
6WDB|1|1|U|2245
6WDB|1|1|G|2246
*
6WDB|1|1|C|2258
6WDB|1|1|U|2259
*
6WDB|1|1|A|2281
6WDB|1|1|G|2282
*
6WDB|1|1|C|2427
6WDB|1|1|G|2428
6WDB|1|1|G|2429
6WDB|1|1|A|2430
6WDB|1|1|U|2431
6WDB|1|1|A|2432
6WDB|1|1|A|2433
6WDB|1|1|A|2434
6WDB|1|1|A|2435
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain b
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L28
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