3D structure

PDB id
6WDF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6WDF|1|1|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6WDF_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0729
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6WDF|1|1|C|584
6WDF|1|1|G|585
6WDF|1|1|A|586
6WDF|1|1|C|587
6WDF|1|1|U|588
6WDF|1|1|U|589
*
6WDF|1|1|A|668
6WDF|1|1|G|669
6WDF|1|1|A|670
6WDF|1|1|C|671
*
6WDF|1|1|G|809
6WDF|1|1|U|810
6WDF|1|1|U|811
6WDF|1|1|C|812
*
6WDF|1|1|G|1195
6WDF|1|1|C|1196
*
6WDF|1|1|G|1250
6WDF|1|1|C|1251
6WDF|1|1|G|1252
6WDF|1|1|A|1253
6WDF|1|1|A|1254
6WDF|1|1|U|1255
6WDF|1|1|G|1256

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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