J5_6WNT_002
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6WNT|1|4|A|532, 6WNT|1|4|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WNT_002 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.059
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WNT|1|4|C|531
6WNT|1|4|A|532
6WNT|1|4|G|533
*
6WNT|1|4|C|560
6WNT|1|4|G|561
6WNT|1|4|U|562
6WNT|1|4|A|563
6WNT|1|4|C|564
*
6WNT|1|4|G|577
6WNT|1|4|G|578
6WNT|1|4|G|579
*
6WNT|1|4|C|1389
6WNT|1|4|A|1390
*
6WNT|1|4|U|2145
6WNT|1|4|G|2146
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L4
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain s
- 50S ribosomal protein L22
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