J5_6WNT_004

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6WNT|1|4|U|1886, 6WNT|1|4|G|1891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WNT_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0772

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|G|1802
6WNT|1|4|C|1803
6WNT|1|4|A|1804
6WNT|1|4|A|1805
6WNT|1|4|A|1806
6WNT|1|4|A|1807
6WNT|1|4|U|1808
6WNT|1|4|G|1809
6WNT|1|4|G|1810
*
6WNT|1|4|C|1834
6WNT|1|4|G|1835
*
6WNT|1|4|U|1879
6WNT|1|4|C|1880
*
6WNT|1|4|G|1884
6WNT|1|4|A|1885
6WNT|1|4|U|1886
6WNT|1|4|A|1887
6WNT|1|4|C|1888
6WNT|1|4|C|1889
6WNT|1|4|A|1890
6WNT|1|4|G|1891
6WNT|1|4|C|1892
*
6WNT|1|4|G|2116
6WNT|1|4|G|2117
6WNT|1|4|C|2118

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19