J5_6WNV_006
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6WNV|1|4|U|1383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WNV_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0747
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6WNV|1|4|C|584
6WNV|1|4|G|585
6WNV|1|4|A|586
6WNV|1|4|C|587
6WNV|1|4|U|588
6WNV|1|4|U|589
*
6WNV|1|4|A|668
6WNV|1|4|G|669
6WNV|1|4|A|670
6WNV|1|4|C|671
*
6WNV|1|4|G|809
6WNV|1|4|U|810
6WNV|1|4|U|811
6WNV|1|4|C|812
*
6WNV|1|4|G|1323
6WNV|1|4|C|1324
*
6WNV|1|4|G|1378
6WNV|1|4|C|1379
6WNV|1|4|G|1380
6WNV|1|4|A|1381
6WNV|1|4|A|1382
6WNV|1|4|U|1383
6WNV|1|4|G|1384
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
Coloring options: