J5_6WOO_002
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6WOO|1|2|A|92, 6WOO|1|2|C|423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WOO_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0716
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WOO|1|2|C|53
6WOO|1|2|A|54
6WOO|1|2|U|55
6WOO|1|2|G|56
*
6WOO|1|2|C|89
6WOO|1|2|G|90
6WOO|1|2|A|91
6WOO|1|2|A|92
6WOO|1|2|U|93
6WOO|1|2|G|94
6WOO|1|2|G|95
6WOO|1|2|C|96
*
6WOO|1|2|G|385
6WOO|1|2|A|386
6WOO|1|2|G|387
*
6WOO|1|2|C|408
6WOO|1|2|A|409
6WOO|1|2|C|410
*
6WOO|1|2|G|421
6WOO|1|2|G|422
6WOO|1|2|C|423
6WOO|1|2|A|424
6WOO|1|2|G|425
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- eIF5B
- Chain EE
- eS4
- Chain GG
- eS6
- Chain II
- eS8
- Chain JJ
- uS4
- Chain V
- uL14
- Chain YY
- eS24
Coloring options: