3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6WOO|1|2|A|92, 6WOO|1|2|C|423
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6WOO_002 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0716
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6WOO|1|2|C|53
6WOO|1|2|A|54
6WOO|1|2|U|55
6WOO|1|2|G|56
*
6WOO|1|2|C|89
6WOO|1|2|G|90
6WOO|1|2|A|91
6WOO|1|2|A|92
6WOO|1|2|U|93
6WOO|1|2|G|94
6WOO|1|2|G|95
6WOO|1|2|C|96
*
6WOO|1|2|G|385
6WOO|1|2|A|386
6WOO|1|2|G|387
*
6WOO|1|2|C|408
6WOO|1|2|A|409
6WOO|1|2|C|410
*
6WOO|1|2|G|421
6WOO|1|2|G|422
6WOO|1|2|C|423
6WOO|1|2|A|424
6WOO|1|2|G|425

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
eIF5B
Chain EE
eS4
Chain GG
eS6
Chain II
eS8
Chain JJ
uS4
Chain V
uL14
Chain YY
eS24

Coloring options:


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