J5_6WOO_007
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6WOO|1|5|U|719, 6WOO|1|5|A|784, 6WOO|1|5|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WOO_007 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1039
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6WOO|1|5|C|675
6WOO|1|5|G|676
6WOO|1|5|A|677
6WOO|1|5|G|678
*
6WOO|1|5|C|702
6WOO|1|5|G|703
6WOO|1|5|U|704
6WOO|1|5|A|705
6WOO|1|5|A|706
*
6WOO|1|5|U|713
6WOO|1|5|G|714
6WOO|1|5|A|715
6WOO|1|5|A|716
6WOO|1|5|C|717
6WOO|1|5|G|718
6WOO|1|5|U|719
6WOO|1|5|A|720
6WOO|1|5|G|721
*
6WOO|1|5|C|749
6WOO|1|5|G|750
6WOO|1|5|A|751
*
6WOO|1|5|U|782
6WOO|1|5|A|783
6WOO|1|5|A|784
6WOO|1|5|G|785
6WOO|1|5|A|786
6WOO|1|5|G|787
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain Q
- eL18
- Chain a
- uL15
- Chain b
- eL29
- Chain i
- eL36
Coloring options: