J5_6WOO_010
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6WOO|1|5|G|2418, 6WOO|1|5|A|2799, 6WOO|1|5|G|2800, 6WOO|1|5|A|2801, 6WOO|1|5|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WOO_010 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.136
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WOO|1|5|U|2416
6WOO|1|5|U|2417
6WOO|1|5|G|2418
6WOO|1|5|A|2419
*
6WOO|1|5|U|2611
6WOO|1|5|U|2612
6WOO|1|5|U|2613
6WOO|1|5|G|2614
*
6WOO|1|5|C|2627
6WOO|1|5|A|2628
*
6WOO|1|5|U|2650
6WOO|1|5|G|2651
*
6WOO|1|5|C|2798
6WOO|1|5|A|2799
6WOO|1|5|G|2800
6WOO|1|5|A|2801
6WOO|1|5|A|2802
6WOO|1|5|A|2803
6WOO|1|5|A|2804
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain o
- eL42
Coloring options: