J5_6WQQ_008

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6WQQ|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WQQ_008 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1076

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WQQ|1|1|C|47
6WQQ|1|1|G|48
6WQQ|1|1|A|49
6WQQ|1|1|U|50
6WQQ|1|1|G|51
6WQQ|1|1|A|52
6WQQ|1|1|A|53
6WQQ|1|1|G|54
*
6WQQ|1|1|C|115
6WQQ|1|1|G|116
6WQQ|1|1|A|117
6WQQ|1|1|A|118
6WQQ|1|1|U|119
6WQQ|1|1|G|120
*
6WQQ|1|1|C|129
6WQQ|1|1|A|130
*
6WQQ|1|1|U|149
6WQQ|1|1|A|150
6WQQ|1|1|U|151
*
6WQQ|1|1|A|178
6WQQ|1|1|A|179
6WQQ|1|1|G|180

Current chains

Chain 1

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L34