J5_6WRU_005
3D structure
- PDB id
- 6WRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6WRU|1|1|U|2103, 6WRU|1|1|G|2455, 6WRU|1|1|G|2456, 6WRU|1|1|A|2457, 6WRU|1|1|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6WRU_005 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1259
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WRU|1|1|U|2101
6WRU|1|1|U|2102
6WRU|1|1|U|2103
6WRU|1|1|A|2104
*
6WRU|1|1|U|2270
6WRU|1|1|U|2271
6WRU|1|1|U|2272
6WRU|1|1|G|2273
*
6WRU|1|1|C|2285
6WRU|1|1|G|2286
*
6WRU|1|1|C|2308
6WRU|1|1|G|2309
*
6WRU|1|1|C|2454
6WRU|1|1|G|2455
6WRU|1|1|G|2456
6WRU|1|1|A|2457
6WRU|1|1|U|2458
6WRU|1|1|A|2459
6WRU|1|1|A|2460
6WRU|1|1|A|2461
6WRU|1|1|A|2462
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L27
- Chain J
- 50S ribosomal protein L28
- Chain Q
- 50S ribosomal protein L35
- Chain X
- 50S ribosomal protein L15
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