J5_6WYV_003

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6WYV|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6WYV_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.1842

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6WYV|1|I|C|584
6WYV|1|I|G|585
6WYV|1|I|A|586
6WYV|1|I|C|587
6WYV|1|I|U|588
6WYV|1|I|U|589
*
6WYV|1|I|A|668
6WYV|1|I|G|669
6WYV|1|I|A|670
6WYV|1|I|C|671
*
6WYV|1|I|G|809
6WYV|1|I|U|810
6WYV|1|I|U|811
6WYV|1|I|C|812
*
6WYV|1|I|G|1195
6WYV|1|I|C|1196
*
6WYV|1|I|G|1250
6WYV|1|I|C|1251
6WYV|1|I|G|1252
6WYV|1|I|A|1253
6WYV|1|I|A|1254
6WYV|1|I|U|1255
6WYV|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4