J5_6XDQ_006
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6XDQ|1|a|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XDQ_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0396
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XDQ|1|a|C|584
6XDQ|1|a|G|585
6XDQ|1|a|A|586
6XDQ|1|a|C|587
6XDQ|1|a|U|588
6XDQ|1|a|U|589
*
6XDQ|1|a|A|668
6XDQ|1|a|G|669
6XDQ|1|a|A|670
6XDQ|1|a|C|671
*
6XDQ|1|a|G|809
6XDQ|1|a|U|810
6XDQ|1|a|U|811
6XDQ|1|a|C|812
*
6XDQ|1|a|G|1195
6XDQ|1|a|C|1196
*
6XDQ|1|a|G|1250
6XDQ|1|a|C|1251
6XDQ|1|a|G|1252
6XDQ|1|a|A|1253
6XDQ|1|a|A|1254
6XDQ|1|a|U|1255
6XDQ|1|a|G|1256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L21
- Chain l
- 50S ribosomal protein L4
- Chain o
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L20
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