J5_6XHV_001

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6XHV|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XHV_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0457

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6XHV|1|1A|C|47
6XHV|1|1A|G|48
6XHV|1|1A|A|49
6XHV|1|1A|U|50
6XHV|1|1A|G|51
6XHV|1|1A|A|52
6XHV|1|1A|A|53
6XHV|1|1A|G|54
*
6XHV|1|1A|C|116
6XHV|1|1A|G|117
6XHV|1|1A|A|118
6XHV|1|1A|A|119
6XHV|1|1A|U|120
6XHV|1|1A|G|121
*
6XHV|1|1A|C|130
6XHV|1|1A|G|131
*
6XHV|1|1A|C|148
6XHV|1|1A|A|149
6XHV|1|1A|C|150
*
6XHV|1|1A|G|176
6XHV|1|1A|G|177
6XHV|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23