J5_6XII_005
3D structure
- PDB id
- 6XII (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 6XII|1|a|A|532, 6XII|1|a|U|562
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XII_005 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0431
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XII|1|a|C|531
6XII|1|a|A|532
6XII|1|a|G|533
*
6XII|1|a|C|560
6XII|1|a|G|561
6XII|1|a|U|562
6XII|1|a|A|563
6XII|1|a|C|564
*
6XII|1|a|G|577
6XII|1|a|G|578
6XII|1|a|G|579
*
6XII|1|a|C|1261
6XII|1|a|A|1262
*
6XII|1|a|U|2017
6XII|1|a|G|2018
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L21
- Chain 1
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain l
- 50S ribosomal protein L4
- Chain z
- 50S ribosomal protein L20
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