J5_6XII_007

3D structure

PDB id

6XII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6XII|1|a|U|1758, 6XII|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XII_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XII|1|a|G|1674
6XII|1|a|C|1675
6XII|1|a|A|1676
6XII|1|a|A|1677
6XII|1|a|A|1678
6XII|1|a|A|1679
6XII|1|a|U|1680
6XII|1|a|G|1681
6XII|1|a|G|1682
*
6XII|1|a|C|1706
6XII|1|a|G|1707
*
6XII|1|a|U|1751
6XII|1|a|C|1752
*
6XII|1|a|G|1756
6XII|1|a|A|1757
6XII|1|a|U|1758
6XII|1|a|A|1759
6XII|1|a|C|1760
6XII|1|a|C|1761
6XII|1|a|A|1762
6XII|1|a|G|1763
6XII|1|a|C|1764
*
6XII|1|a|G|1988
6XII|1|a|G|1989
6XII|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19