J5_6XQE_001

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6XQE|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XQE_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0631

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6XQE|1|1A|C|47
6XQE|1|1A|G|48
6XQE|1|1A|A|49
6XQE|1|1A|U|50
6XQE|1|1A|G|51
6XQE|1|1A|A|52
6XQE|1|1A|A|53
6XQE|1|1A|G|54
*
6XQE|1|1A|C|116
6XQE|1|1A|G|117
6XQE|1|1A|A|118
6XQE|1|1A|A|119
6XQE|1|1A|U|120
6XQE|1|1A|G|121
*
6XQE|1|1A|C|130
6XQE|1|1A|G|131
*
6XQE|1|1A|C|148
6XQE|1|1A|A|149
6XQE|1|1A|C|150
*
6XQE|1|1A|G|176
6XQE|1|1A|G|177
6XQE|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23