J5_6XYW_006
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UUCA*UUUA*UG*UG*CGGAUCAAA
- Length
- 21 nucleotides
- Bulged bases
- 6XYW|1|1|C|2387, 6XYW|1|1|G|2726, 6XYW|1|1|G|2727||A, 6XYW|1|1|A|2728||A, 6XYW|1|1|U|2729, 6XYW|1|1|A|2732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6XYW_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1863
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|1|U|2385
6XYW|1|1|U|2386
6XYW|1|1|C|2387
6XYW|1|1|A|2388
*
6XYW|1|1|U|2545
6XYW|1|1|U|2546
6XYW|1|1|U|2547
6XYW|1|1|A|2548
*
6XYW|1|1|U|2560
6XYW|1|1|G|2561
*
6XYW|1|1|U|2583
6XYW|1|1|G|2584
*
6XYW|1|1|C|2725
6XYW|1|1|G|2726
6XYW|1|1|G|2727||A
6XYW|1|1|A|2728||A
6XYW|1|1|U|2729
6XYW|1|1|C|2730
6XYW|1|1|A|2731
6XYW|1|1|A|2732
6XYW|1|1|A|2733
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AC
- At3g06320
- Chain Ab
- Expressed protein
- Chain Aw
- 50S ribosomal protein L27
- Chain Ax
- AT4g31460/F3L17_30
Coloring options: