3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
6XZ7|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6XZ7_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0356
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6XZ7|1|A|C|584
6XZ7|1|A|G|585
6XZ7|1|A|A|586
6XZ7|1|A|C|587
6XZ7|1|A|U|588
6XZ7|1|A|U|589
*
6XZ7|1|A|A|668
6XZ7|1|A|G|669
6XZ7|1|A|A|670
6XZ7|1|A|C|671
*
6XZ7|1|A|G|809
6XZ7|1|A|U|810
6XZ7|1|A|U|811
6XZ7|1|A|C|812
*
6XZ7|1|A|G|1195
6XZ7|1|A|C|1196
*
6XZ7|1|A|G|1250
6XZ7|1|A|C|1251
6XZ7|1|A|G|1252
6XZ7|1|A|A|1253
6XZ7|1|A|A|1254
6XZ7|1|A|U|1255
6XZ7|1|A|G|1256

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain d
50S ribosomal protein L35

Coloring options:


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