J5_6XZ7_006

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

6XZ7|1|A|U|2076, 6XZ7|1|A|G|2428, 6XZ7|1|A|G|2429||A, 6XZ7|1|A|A|2430||A, 6XZ7|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XZ7_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0615

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6XZ7|1|A|U|2074
6XZ7|1|A|U|2075
6XZ7|1|A|U|2076
6XZ7|1|A|A|2077
*
6XZ7|1|A|U|2243
6XZ7|1|A|U|2244
6XZ7|1|A|U|2245
6XZ7|1|A|G|2246
*
6XZ7|1|A|C|2258
6XZ7|1|A|U|2259
*
6XZ7|1|A|A|2281
6XZ7|1|A|G|2282
*
6XZ7|1|A|C|2427
6XZ7|1|A|G|2428
6XZ7|1|A|G|2429||A
6XZ7|1|A|A|2430||A
6XZ7|1|A|U|2431
6XZ7|1|A|A|2432
6XZ7|1|A|A|2433
6XZ7|1|A|A|2434
6XZ7|1|A|A|2435

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27

Chain X

50S ribosomal protein L28

Chain b

50S ribosomal protein L33

Chain d

50S ribosomal protein L35