J5_6XZA_005

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

6XZA|1|A2|A|532, 6XZA|1|A2|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6XZA_005 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.0408

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6XZA|1|A2|C|531
6XZA|1|A2|A|532
6XZA|1|A2|G|533
*
6XZA|1|A2|C|560
6XZA|1|A2|G|561
6XZA|1|A2|U|562
6XZA|1|A2|A|563
6XZA|1|A2|C|564
*
6XZA|1|A2|G|577
6XZA|1|A2|G|578
6XZA|1|A2|G|579
*
6XZA|1|A2|C|1261
6XZA|1|A2|A|1262
*
6XZA|1|A2|U|2017
6XZA|1|A2|G|2018

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain Q2

50S ribosomal protein L20

Chain R2

50S ribosomal protein L21

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32