J5_6YDP_003
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 6YDP|1|BA|U|1071, 6YDP|1|BA|G|1252, 6YDP|1|BA|G|1253, 6YDP|1|BA|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YDP_003 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.2408
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YDP|1|BA|U|1069
6YDP|1|BA|U|1070
6YDP|1|BA|U|1071
6YDP|1|BA|A|1072
*
6YDP|1|BA|U|1143
6YDP|1|BA|U|1144
6YDP|1|BA|C|1145
6YDP|1|BA|G|1146
*
6YDP|1|BA|C|1158
6YDP|1|BA|U|1159
*
6YDP|1|BA|A|1181
6YDP|1|BA|G|1182
*
6YDP|1|BA|C|1251
6YDP|1|BA|G|1252
6YDP|1|BA|G|1253
6YDP|1|BA|A|1254
6YDP|1|BA|A|1255
6YDP|1|BA|C|1256
6YDP|1|BA|A|1257
6YDP|1|BA|A|1258
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B6
- bL33m
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BD
- uL2m
- Chain BP
- uL15m
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