J5_6YEF_003
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UG*CA
- Length
- 15 nucleotides
- Bulged bases
- 6YEF|1|A|A|577, 6YEF|1|A|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YEF_003 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.0975
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YEF|1|A|U|576
6YEF|1|A|A|577
6YEF|1|A|G|578
*
6YEF|1|A|C|603
6YEF|1|A|G|604
6YEF|1|A|U|605
6YEF|1|A|G|606
6YEF|1|A|C|607
*
6YEF|1|A|G|620
6YEF|1|A|A|621
6YEF|1|A|A|622
*
6YEF|1|A|U|1299
6YEF|1|A|G|1300
*
6YEF|1|A|C|2044
6YEF|1|A|A|2045
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
- Chain V
- 50S ribosomal protein L22
Coloring options: