J5_6YLY_001
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6YLY|1|3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YLY_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0945
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YLY|1|1|A|20
6YLY|1|1|G|21
6YLY|1|1|G|22
*
6YLY|1|3|C|35
6YLY|1|3|G|36
6YLY|1|3|A|37
6YLY|1|3|U|38
6YLY|1|3|G|39
6YLY|1|3|A|40
6YLY|1|3|A|41
6YLY|1|3|G|42
*
6YLY|1|3|U|102
6YLY|1|3|G|103
6YLY|1|3|A|104
6YLY|1|3|A|105
6YLY|1|3|C|106
6YLY|1|3|G|107
*
6YLY|1|3|C|115
6YLY|1|3|G|116
*
6YLY|1|3|C|137
6YLY|1|3|A|138
6YLY|1|3|U|139
Current chains
- Chain 1
- 25S rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain n
- Pescadillo homolog
Coloring options: