J5_6YS3_003
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6YS3|1|b|U|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YS3_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0579
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6YS3|1|b|C|586
6YS3|1|b|G|587
6YS3|1|b|A|588
6YS3|1|b|C|589
6YS3|1|b|U|590
6YS3|1|b|U|591
*
6YS3|1|b|A|670
6YS3|1|b|G|671
6YS3|1|b|A|672
6YS3|1|b|C|673
*
6YS3|1|b|G|811
6YS3|1|b|U|812
6YS3|1|b|U|813
6YS3|1|b|C|814
*
6YS3|1|b|G|1197
6YS3|1|b|C|1198
*
6YS3|1|b|G|1252
6YS3|1|b|C|1253
6YS3|1|b|G|1254
6YS3|1|b|A|1255
6YS3|1|b|A|1256
6YS3|1|b|U|1257
6YS3|1|b|G|1258
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain z
- Gamma-crystallin B
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