J5_6YS3_006
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6YS3|1|b|U|2080, 6YS3|1|b|G|2432, 6YS3|1|b|G|2433, 6YS3|1|b|A|2434, 6YS3|1|b|U|2435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YS3_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0888
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YS3|1|b|U|2078
6YS3|1|b|U|2079
6YS3|1|b|U|2080
6YS3|1|b|A|2081
*
6YS3|1|b|U|2247
6YS3|1|b|U|2248
6YS3|1|b|U|2249
6YS3|1|b|G|2250
*
6YS3|1|b|C|2262
6YS3|1|b|U|2263
*
6YS3|1|b|A|2285
6YS3|1|b|G|2286
*
6YS3|1|b|C|2431
6YS3|1|b|G|2432
6YS3|1|b|G|2433
6YS3|1|b|A|2434
6YS3|1|b|U|2435
6YS3|1|b|A|2436
6YS3|1|b|A|2437
6YS3|1|b|A|2438
6YS3|1|b|A|2439
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain y
- 50S ribosomal protein L27
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