J5_6YSI_003
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6YSI|1|1|U|1243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6YSI_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0438
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6YSI|1|1|C|575
6YSI|1|1|G|576
6YSI|1|1|A|577
6YSI|1|1|C|578
6YSI|1|1|U|579
6YSI|1|1|U|580
*
6YSI|1|1|A|659
6YSI|1|1|G|660
6YSI|1|1|A|661
6YSI|1|1|C|662
*
6YSI|1|1|G|800
6YSI|1|1|U|801
6YSI|1|1|U|802
6YSI|1|1|C|803
*
6YSI|1|1|G|1183
6YSI|1|1|C|1184
*
6YSI|1|1|G|1238
6YSI|1|1|C|1239
6YSI|1|1|G|1240
6YSI|1|1|A|1241
6YSI|1|1|A|1242
6YSI|1|1|U|1243
6YSI|1|1|G|1244
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain H
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L20
- Chain N
- 50S ribosomal protein L21
- Chain a
- 50S ribosomal protein L35
Coloring options: