J5_6YT9_003

3D structure

PDB id

6YT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6YT9|1|2|A|62, 6YT9|1|2|A|105, 6YT9|1|2|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6YT9_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1024

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.2

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6YT9|1|2|C|60
6YT9|1|2|A|61
6YT9|1|2|A|62
6YT9|1|2|G|63
*
6YT9|1|2|C|102
6YT9|1|2|G|103
6YT9|1|2|G|104
6YT9|1|2|A|105
6YT9|1|2|C|106
6YT9|1|2|G|107
6YT9|1|2|G|108
6YT9|1|2|G|109
*
6YT9|1|2|C|310
6YT9|1|2|A|311
6YT9|1|2|C|312
*
6YT9|1|2|G|333
6YT9|1|2|A|334
6YT9|1|2|C|335
*
6YT9|1|2|G|346
6YT9|1|2|G|347
6YT9|1|2|C|348
6YT9|1|2|A|349
6YT9|1|2|G|350

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20