J5_6Z1P_004
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGAAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6Z1P|1|Ab|U|1795, 6Z1P|1|Ab|G|2122, 6Z1P|1|Ab|A|2123, 6Z1P|1|Ab|A|2124, 6Z1P|1|Ab|U|2125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6Z1P_004 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1167
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Z1P|1|Ab|U|1793
6Z1P|1|Ab|U|1794
6Z1P|1|Ab|U|1795
6Z1P|1|Ab|A|1796
*
6Z1P|1|Ab|U|1937
6Z1P|1|Ab|U|1938
6Z1P|1|Ab|U|1939
6Z1P|1|Ab|G|1940
*
6Z1P|1|Ab|C|1952
6Z1P|1|Ab|U|1953
*
6Z1P|1|Ab|A|1975
6Z1P|1|Ab|G|1976
*
6Z1P|1|Ab|C|2121
6Z1P|1|Ab|G|2122
6Z1P|1|Ab|A|2123
6Z1P|1|Ab|A|2124
6Z1P|1|Ab|U|2125
6Z1P|1|Ab|A|2126
6Z1P|1|Ab|A|2127
6Z1P|1|Ab|A|2128
6Z1P|1|Ab|A|2129
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AA
- 50S ribosomal protein L27
- Chain AB
- Ribosomal protein L28
- Chain AE
- 50S ribosomal protein L33
- Chain AF
- bL35m
- Chain Aa
- LSU rRNA_1
- Chain Ac
- Ribosomal protein L2
- Chain Aq
- Ribosomal protein L15, putative
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