J5_6Z6K_007

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

6Z6K|1|C2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6Z6K_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1087

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6Z6K|1|C2|C|31
6Z6K|1|C2|U|32
6Z6K|1|C2|U|33
6Z6K|1|C2|G|34
6Z6K|1|C2|U|35
*
6Z6K|1|C2|A|473
6Z6K|1|C2|A|474
6Z6K|1|C2|A|475
6Z6K|1|C2|U|476
6Z6K|1|C2|A|477
6Z6K|1|C2|A|478
6Z6K|1|C2|C|479
*
6Z6K|1|C2|G|509
6Z6K|1|C2|G|510
6Z6K|1|C2|A|511
6Z6K|1|C2|A|512
6Z6K|1|C2|U|513
6Z6K|1|C2|G|514
*
6Z6K|1|C2|C|543
6Z6K|1|C2|A|544
6Z6K|1|C2|A|545
6Z6K|1|C2|U|546
*
6Z6K|1|C2|A|592
6Z6K|1|C2|U|593
6Z6K|1|C2|A|594
6Z6K|1|C2|G|595

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A