3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6ZCE|1|A|U|56, 6ZCE|1|A|A|93, 6ZCE|1|A|C|424
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6ZCE_002 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0965
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6ZCE|1|A|C|54
6ZCE|1|A|A|55
6ZCE|1|A|U|56
6ZCE|1|A|G|57
*
6ZCE|1|A|C|90
6ZCE|1|A|G|91
6ZCE|1|A|A|92
6ZCE|1|A|A|93
6ZCE|1|A|U|94
6ZCE|1|A|G|95
6ZCE|1|A|G|96
6ZCE|1|A|C|97
*
6ZCE|1|A|G|386
6ZCE|1|A|A|387
6ZCE|1|A|G|388
*
6ZCE|1|A|C|409
6ZCE|1|A|A|410
6ZCE|1|A|C|411
*
6ZCE|1|A|G|422
6ZCE|1|A|G|423
6ZCE|1|A|C|424
6ZCE|1|A|A|425
6ZCE|1|A|G|426

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain F
40S ribosomal protein S4-A
Chain H
40S ribosomal protein S6-A
Chain J
40S ribosomal protein S8-A
Chain K
40S ribosomal protein S9-A
Chain Z
40S ribosomal protein S24-A

Coloring options:


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