J5_6ZLW_001

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6ZLW|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZLW_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0942

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZLW|1|2|C|30
6ZLW|1|2|U|31
6ZLW|1|2|U|32
6ZLW|1|2|G|33
6ZLW|1|2|U|34
*
6ZLW|1|2|A|521
6ZLW|1|2|A|522
6ZLW|1|2|A|523
6ZLW|1|2|U|524
6ZLW|1|2|A|525
6ZLW|1|2|A|526
6ZLW|1|2|C|527
*
6ZLW|1|2|G|558
6ZLW|1|2|G|559
6ZLW|1|2|A|560
6ZLW|1|2|A|561
6ZLW|1|2|U|562
6ZLW|1|2|G|563
*
6ZLW|1|2|C|592
6ZLW|1|2|C|593
6ZLW|1|2|A|594
6ZLW|1|2|U|595
*
6ZLW|1|2|A|641
6ZLW|1|2|U|642
6ZLW|1|2|A|643
6ZLW|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30