J5_6ZN5_003
3D structure
- PDB id
- 6ZN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6ZN5|1|2|U|55, 6ZN5|1|2|A|92, 6ZN5|1|2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZN5_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0695
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZN5|1|2|C|53
6ZN5|1|2|A|54
6ZN5|1|2|U|55
6ZN5|1|2|G|56
*
6ZN5|1|2|C|89
6ZN5|1|2|G|90
6ZN5|1|2|A|91
6ZN5|1|2|A|92
6ZN5|1|2|U|93
6ZN5|1|2|G|94
6ZN5|1|2|G|95
6ZN5|1|2|C|96
*
6ZN5|1|2|G|434
6ZN5|1|2|A|435
6ZN5|1|2|G|436
*
6ZN5|1|2|C|457
6ZN5|1|2|A|458
6ZN5|1|2|C|459
*
6ZN5|1|2|G|470
6ZN5|1|2|G|471
6ZN5|1|2|C|472
6ZN5|1|2|A|473
6ZN5|1|2|G|474
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- 40S ribosomal protein S9
- Chain Y
- 40S ribosomal protein S24
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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