J5_6ZQC_002
3D structure
- PDB id
- 6ZQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 6ZQC|1|D3|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ZQC_002 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1889
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZQC|1|D3|C|31
6ZQC|1|D3|U|32
6ZQC|1|D3|U|33
6ZQC|1|D3|G|34
6ZQC|1|D3|U|35
*
6ZQC|1|D3|A|473
6ZQC|1|D3|A|474
6ZQC|1|D3|A|475
6ZQC|1|D3|U|476
6ZQC|1|D3|A|477
6ZQC|1|D3|A|478
6ZQC|1|D3|C|479
*
6ZQC|1|D3|G|509
6ZQC|1|D3|G|510
6ZQC|1|D3|A|511
6ZQC|1|D3|A|512
6ZQC|1|D3|U|513
6ZQC|1|D3|G|514
*
6ZQC|1|D3|C|543
6ZQC|1|D3|A|544
6ZQC|1|D3|A|545
6ZQC|1|D3|U|546
*
6ZQC|1|D3|A|592
6ZQC|1|D3|U|593
6ZQC|1|D3|A|594
6ZQC|1|D3|G|595
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CH
- Ribosomal RNA-processing protein 9
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain UC
- Something about silencing protein 10
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