J5_6ZXD_001

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

6ZXD|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZXD_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1301

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZXD|1|2|C|30
6ZXD|1|2|U|31
6ZXD|1|2|U|32
6ZXD|1|2|G|33
6ZXD|1|2|U|34
*
6ZXD|1|2|A|521
6ZXD|1|2|A|522
6ZXD|1|2|A|523
6ZXD|1|2|U|524
6ZXD|1|2|A|525
6ZXD|1|2|A|526
6ZXD|1|2|C|527
*
6ZXD|1|2|G|558
6ZXD|1|2|G|559
6ZXD|1|2|A|560
6ZXD|1|2|A|561
6ZXD|1|2|U|562
6ZXD|1|2|G|563
*
6ZXD|1|2|C|592
6ZXD|1|2|C|593
6ZXD|1|2|A|594
6ZXD|1|2|U|595
*
6ZXD|1|2|A|641
6ZXD|1|2|U|642
6ZXD|1|2|A|643
6ZXD|1|2|G|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30