J5_6ZXH_001

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

6ZXH|1|2|C|593

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ZXH_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1386

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZXH|1|2|C|30
6ZXH|1|2|U|31
6ZXH|1|2|U|32
6ZXH|1|2|G|33
6ZXH|1|2|PSU|34
*
6ZXH|1|2|A|521
6ZXH|1|2|A|522
6ZXH|1|2|A|523
6ZXH|1|2|U|524
6ZXH|1|2|A|525
6ZXH|1|2|A|526
6ZXH|1|2|C|527
*
6ZXH|1|2|G|558
6ZXH|1|2|G|559
6ZXH|1|2|A|560
6ZXH|1|2|A|561
6ZXH|1|2|U|562
6ZXH|1|2|G|563
*
6ZXH|1|2|C|592
6ZXH|1|2|C|593
6ZXH|1|2|A|594
6ZXH|1|2|U|595
*
6ZXH|1|2|A|641
6ZXH|1|2|U|642
6ZXH|1|2|A|643
6ZXH|1|2|OMG|644

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30