J5_7AJT_003
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7AJT|1|D3|U|56, 7AJT|1|D3|A|93, 7AJT|1|D3|C|424, 7AJT|1|D3|A|425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7AJT_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.5109
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7AJT|1|D3|C|54
7AJT|1|D3|A|55
7AJT|1|D3|U|56
7AJT|1|D3|G|57
*
7AJT|1|D3|C|90
7AJT|1|D3|G|91
7AJT|1|D3|A|92
7AJT|1|D3|A|93
7AJT|1|D3|U|94
7AJT|1|D3|G|95
7AJT|1|D3|G|96
7AJT|1|D3|C|97
*
7AJT|1|D3|G|386
7AJT|1|D3|A|387
7AJT|1|D3|G|388
*
7AJT|1|D3|C|409
7AJT|1|D3|A|410
7AJT|1|D3|C|411
*
7AJT|1|D3|G|422
7AJT|1|D3|G|423
7AJT|1|D3|C|424
7AJT|1|D3|A|425
7AJT|1|D3|G|426
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DG
- 40S ribosomal protein S6-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DY
- 40S ribosomal protein S24-A
- Chain JA
- RNA cytidine acetyltransferase
- Chain JC
- Ribosome biogenesis protein ENP2
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