J5_7ASP_002

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAUGAAG*CGAAUG*CA*UUAU*AAG

Length

23 nucleotides

Bulged bases

7ASP|1|Y|U|50, 7ASP|1|Y|U|149

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ASP_002 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.325

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7ASP|1|Y|C|47
7ASP|1|Y|A|48
7ASP|1|Y|A|49
7ASP|1|Y|U|50
7ASP|1|Y|G|51
7ASP|1|Y|A|52
7ASP|1|Y|A|53
7ASP|1|Y|G|54
*
7ASP|1|Y|C|115
7ASP|1|Y|G|116
7ASP|1|Y|A|117
7ASP|1|Y|A|118
7ASP|1|Y|U|119
7ASP|1|Y|G|120
*
7ASP|1|Y|C|129
7ASP|1|Y|A|130
*
7ASP|1|Y|U|148
7ASP|1|Y|U|149
7ASP|1|Y|A|150
7ASP|1|Y|U|151
*
7ASP|1|Y|A|178
7ASP|1|Y|A|179
7ASP|1|Y|G|180

Current chains

Chain Y

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L34