J5_7AZO_003

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AZO_003 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0712

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7AZO|1|16SB|C|682
7AZO|1|16SB|U|683
7AZO|1|16SB|G|684
7AZO|1|16SB|G|685
*
7AZO|1|16SB|C|1044
7AZO|1|16SB|U|1045
7AZO|1|16SB|U|1046
7AZO|1|16SB|G|1047
*
7AZO|1|16SB|C|1077
7AZO|1|16SB|U|1078
7AZO|1|16SB|G|1079
7AZO|1|16SB|A|1080
7AZO|1|16SB|A|1081
7AZO|1|16SB|C|1082
*
7AZO|1|16SB|G|1122
7AZO|1|16SB|G|1123
7AZO|1|16SB|U|1124
7AZO|1|16SB|A|1125
7AZO|1|16SB|A|1126
7AZO|1|16SB|U|1127
7AZO|1|16SB|A|1128
7AZO|1|16SB|G|1129
*
7AZO|1|16SB|C|1174
7AZO|1|16SB|G|1175
7AZO|1|16SB|A|1176
7AZO|1|16SB|G|1177

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S12B

30S ribosomal protein S12

Chain S4B

30S ribosomal protein S4