J5_7AZO_005

3D structure

PDB id

7AZO (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7AZO|1|23SA|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7AZO_005 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0583

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7AZO|1|23SA|C|46
7AZO|1|23SA|G|47
7AZO|1|23SA|A|48
7AZO|1|23SA|U|49
7AZO|1|23SA|G|50
7AZO|1|23SA|A|51
7AZO|1|23SA|A|52
7AZO|1|23SA|G|53
*
7AZO|1|23SA|C|114
7AZO|1|23SA|G|115
7AZO|1|23SA|A|116
7AZO|1|23SA|A|117
7AZO|1|23SA|U|118
7AZO|1|23SA|G|119
*
7AZO|1|23SA|C|128
7AZO|1|23SA|G|129
*
7AZO|1|23SA|C|148
7AZO|1|23SA|A|149
7AZO|1|23SA|C|150
*
7AZO|1|23SA|G|166
7AZO|1|23SA|G|167
7AZO|1|23SA|G|168

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L23A

50S ribosomal protein L23

Chain L34A

50S ribosomal protein L34