J5_7AZO_012
3D structure
- PDB id
- 7AZO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-977
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7AZO|1|23SA|U|2101, 7AZO|1|23SA|G|2443, 7AZO|1|23SA|G|2444, 7AZO|1|23SA|A|2445, 7AZO|1|23SA|U|2446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7AZO_012 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0774
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7AZO|1|23SA|U|2099
7AZO|1|23SA|U|2100
7AZO|1|23SA|U|2101
7AZO|1|23SA|A|2102
*
7AZO|1|23SA|U|2258
7AZO|1|23SA|U|2259
7AZO|1|23SA|U|2260
7AZO|1|23SA|G|2261
*
7AZO|1|23SA|C|2273
7AZO|1|23SA|G|2274
*
7AZO|1|23SA|C|2296
7AZO|1|23SA|G|2297
*
7AZO|1|23SA|C|2442
7AZO|1|23SA|G|2443
7AZO|1|23SA|G|2444
7AZO|1|23SA|A|2445
7AZO|1|23SA|U|2446
7AZO|1|23SA|A|2447
7AZO|1|23SA|A|2448
7AZO|1|23SA|A|2449
7AZO|1|23SA|A|2450
Current chains
- Chain 23SA
- 23S rRNA
Nearby chains
- Chain ESIA
- Transfer RNA; tRNA
- Chain L15A
- 50S ribosomal protein L15
- Chain L27A
- 50S ribosomal protein L27
- Chain L28A
- 50S ribosomal protein L28
- Chain L2A
- 50S ribosomal protein L2
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