3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
7B5K|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7B5K_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.056
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

7B5K|1|A|C|584
7B5K|1|A|G|585
7B5K|1|A|A|586
7B5K|1|A|C|587
7B5K|1|A|U|588
7B5K|1|A|U|589
*
7B5K|1|A|A|668
7B5K|1|A|G|669
7B5K|1|A|A|670
7B5K|1|A|C|671
*
7B5K|1|A|G|809
7B5K|1|A|U|810
7B5K|1|A|U|811
7B5K|1|A|C|812
*
7B5K|1|A|G|1195
7B5K|1|A|C|1196
*
7B5K|1|A|G|1250
7B5K|1|A|C|1251
7B5K|1|A|G|1252
7B5K|1|A|A|1253
7B5K|1|A|A|1254
7B5K|1|A|U|1255
7B5K|1|A|G|1256

Current chains

Chain A
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


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