J5_7B7D_001

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

7B7D|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7B7D_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1275

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7B7D|1|2|C|31
7B7D|1|2|U|32
7B7D|1|2|U|33
7B7D|1|2|G|34
7B7D|1|2|U|35
*
7B7D|1|2|A|473
7B7D|1|2|A|474
7B7D|1|2|A|475
7B7D|1|2|U|476
7B7D|1|2|A|477
7B7D|1|2|A|478
7B7D|1|2|C|479
*
7B7D|1|2|G|509
7B7D|1|2|G|510
7B7D|1|2|A|511
7B7D|1|2|A|512
7B7D|1|2|U|513
7B7D|1|2|G|514
*
7B7D|1|2|C|543
7B7D|1|2|A|544
7B7D|1|2|A|545
7B7D|1|2|U|546
*
7B7D|1|2|A|592
7B7D|1|2|U|593
7B7D|1|2|A|594
7B7D|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A