J5_7BL6_004

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7BL6|1|A|U|1758, 7BL6|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7BL6_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1138

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BL6|1|A|G|1674
7BL6|1|A|C|1675
7BL6|1|A|A|1676
7BL6|1|A|A|1677
7BL6|1|A|A|1678
7BL6|1|A|A|1679
7BL6|1|A|U|1680
7BL6|1|A|G|1681
7BL6|1|A|G|1682
*
7BL6|1|A|C|1706
7BL6|1|A|G|1707
*
7BL6|1|A|U|1751
7BL6|1|A|C|1752
*
7BL6|1|A|G|1756
7BL6|1|A|A|1757
7BL6|1|A|U|1758
7BL6|1|A|A|1759
7BL6|1|A|C|1760
7BL6|1|A|C|1761
7BL6|1|A|A|1762
7BL6|1|A|G|1763
7BL6|1|A|C|1764
*
7BL6|1|A|G|1988
7BL6|1|A|G|1989
7BL6|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19