J5_7F0D_006

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAAAAUGC*GA*UC*GAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

7F0D|1|A|A|1992, 7F0D|1|A|G|1997

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7F0D_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.2056

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7F0D|1|A|G|1909
7F0D|1|A|C|1910
7F0D|1|A|A|1911
7F0D|1|A|A|1912
7F0D|1|A|A|1913
7F0D|1|A|A|1914
7F0D|1|A|U|1915
7F0D|1|A|G|1916
7F0D|1|A|C|1917
*
7F0D|1|A|G|1941
7F0D|1|A|A|1942
*
7F0D|1|A|U|1985
7F0D|1|A|C|1986
*
7F0D|1|A|G|1990
7F0D|1|A|A|1991
7F0D|1|A|A|1992
7F0D|1|A|A|1993
7F0D|1|A|C|1994
7F0D|1|A|C|1995
7F0D|1|A|A|1996
7F0D|1|A|G|1997
7F0D|1|A|U|1998
*
7F0D|1|A|A|2226
7F0D|1|A|A|2227
7F0D|1|A|C|2228

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19