J5_7JQC_001
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 7JQC|1|A|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7JQC_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1096
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7JQC|1|A|C|30
7JQC|1|A|U|31
7JQC|1|A|U|32
7JQC|1|A|G|33
7JQC|1|A|U|34
*
7JQC|1|A|A|521
7JQC|1|A|A|522
7JQC|1|A|A|523
7JQC|1|A|U|524
7JQC|1|A|A|525
7JQC|1|A|A|526
7JQC|1|A|C|527
*
7JQC|1|A|G|558
7JQC|1|A|G|559
7JQC|1|A|A|560
7JQC|1|A|A|561
7JQC|1|A|U|562
7JQC|1|A|G|563
*
7JQC|1|A|C|592
7JQC|1|A|C|593
7JQC|1|A|A|594
7JQC|1|A|U|595
*
7JQC|1|A|A|641
7JQC|1|A|U|642
7JQC|1|A|A|643
7JQC|1|A|G|644
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain c
- Uncharacterized protein
- Chain f
- eS30
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