J5_7JQL_010

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7JQL|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7JQL_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0688

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7JQL|1|2A|C|47
7JQL|1|2A|G|48
7JQL|1|2A|A|49
7JQL|1|2A|U|50
7JQL|1|2A|G|51
7JQL|1|2A|A|52
7JQL|1|2A|A|53
7JQL|1|2A|G|54
*
7JQL|1|2A|C|116
7JQL|1|2A|G|117
7JQL|1|2A|A|118
7JQL|1|2A|A|119
7JQL|1|2A|U|120
7JQL|1|2A|G|121
*
7JQL|1|2A|C|130
7JQL|1|2A|G|131
*
7JQL|1|2A|C|148
7JQL|1|2A|A|149
7JQL|1|2A|C|150
*
7JQL|1|2A|G|176
7JQL|1|2A|G|177
7JQL|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23