3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
7JSW|1|1|U|1758, 7JSW|1|1|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7JSW_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.1295
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7JSW|1|1|G|1674
7JSW|1|1|C|1675
7JSW|1|1|A|1676
7JSW|1|1|A|1677
7JSW|1|1|A|1678
7JSW|1|1|A|1679
7JSW|1|1|U|1680
7JSW|1|1|G|1681
7JSW|1|1|G|1682
*
7JSW|1|1|C|1706
7JSW|1|1|G|1707
*
7JSW|1|1|U|1751
7JSW|1|1|C|1752
*
7JSW|1|1|G|1756
7JSW|1|1|A|1757
7JSW|1|1|U|1758
7JSW|1|1|A|1759
7JSW|1|1|C|1760
7JSW|1|1|C|1761
7JSW|1|1|A|1762
7JSW|1|1|G|1763
7JSW|1|1|C|1764
*
7JSW|1|1|G|1988
7JSW|1|1|G|1989
7JSW|1|1|C|1990

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14
Chain p
50S ribosomal protein L19

Coloring options:


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