J5_7K54_006

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

7K54|1|1|U|2076, 7K54|1|1|G|2428, 7K54|1|1|G|2429, 7K54|1|1|A|2430, 7K54|1|1|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7K54_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0817

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7K54|1|1|U|2074
7K54|1|1|U|2075
7K54|1|1|U|2076
7K54|1|1|A|2077
*
7K54|1|1|U|2243
7K54|1|1|U|2244
7K54|1|1|U|2245
7K54|1|1|G|2246
*
7K54|1|1|C|2258
7K54|1|1|U|2259
*
7K54|1|1|A|2281
7K54|1|1|G|2282
*
7K54|1|1|C|2427
7K54|1|1|G|2428
7K54|1|1|G|2429
7K54|1|1|A|2430
7K54|1|1|U|2431
7K54|1|1|A|2432
7K54|1|1|A|2433
7K54|1|1|A|2434
7K54|1|1|A|2435

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain b

50S ribosomal protein L2

Chain l

50S ribosomal protein L15

Chain w

50S ribosomal protein L27

Chain x

50S ribosomal protein L28