J5_7K5I_001

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

7K5I|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7K5I_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.099

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7K5I|1|2|C|30
7K5I|1|2|U|31
7K5I|1|2|U|32
7K5I|1|2|G|33
7K5I|1|2|U|34
*
7K5I|1|2|A|521
7K5I|1|2|A|522
7K5I|1|2|A|523
7K5I|1|2|U|524
7K5I|1|2|A|525
7K5I|1|2|A|526
7K5I|1|2|C|527
*
7K5I|1|2|G|558
7K5I|1|2|G|559
7K5I|1|2|A|560
7K5I|1|2|A|561
7K5I|1|2|U|562
7K5I|1|2|G|563
*
7K5I|1|2|C|592
7K5I|1|2|C|593
7K5I|1|2|A|594
7K5I|1|2|U|595
*
7K5I|1|2|A|641
7K5I|1|2|U|642
7K5I|1|2|A|643
7K5I|1|2|G|644

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30