J5_7LH5_011

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7LH5|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7LH5_011 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0559

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7LH5|1|DA|C|47
7LH5|1|DA|G|48
7LH5|1|DA|A|49
7LH5|1|DA|U|50
7LH5|1|DA|G|51
7LH5|1|DA|A|52
7LH5|1|DA|A|53
7LH5|1|DA|G|54
*
7LH5|1|DA|C|116
7LH5|1|DA|G|117
7LH5|1|DA|A|118
7LH5|1|DA|A|119
7LH5|1|DA|U|120
7LH5|1|DA|G|121
*
7LH5|1|DA|C|130
7LH5|1|DA|G|131
*
7LH5|1|DA|C|148
7LH5|1|DA|A|149
7LH5|1|DA|C|150
*
7LH5|1|DA|G|176
7LH5|1|DA|G|177
7LH5|1|DA|G|178

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34